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Table 1 The annotations in GenBank and predictions by VIGOR, FLAN, GeneMarkS and ZCURVE_V of segmented RNA viruses, influenza viruses (Flu) and rotaviruses (Rtv)

From: VIGOR, an annotation program for small viral genomes

   No. of seq. No. of genes No. of correct pred. Sp+(%)/Sn++(%) No. of partial correct gene Discrepancy* No. of missing genes No. of mis-predicted genes No. of new genes Geno-typing
  Ref. Seq 2376 3177         
  VIGOR   3178 3169 99.40/99.9 3 5 0 1 0 Yes
Flu FLAN   3149 3124 99.2/98.33 6 57 N/A 9 0 Yes
  GeneMarkS   2754 1119 40.63/35.22 1288   770 347 0 No
  ZCURVE_V   2809 2296 81.74/72.27 40   841 473 0 No
  Ref. Seq. 1166 1158         
  VIGOR   1202 1199 99.75/99.75 3   0 0 44 Yes
Rtv            
  GeneMarkS   1208 378 31.29/32.64 776   5 54 1 No
  ZCURVE_V   1171 1113 95.05/96.11 45   1 13 1 No
  1. +. Specificity;++ Sensitivity. *. Discrepancy cases between this prediction and GenBank annotation.