VIGOR, an annotation program for small viral genomes

BMC Bioinformatics

Table 1 The annotations in GenBank and predictions by VIGOR, FLAN, GeneMarkS and ZCURVE_V of segmented RNA viruses, influenza viruses (Flu) and rotaviruses (Rtv)

		No. of seq.	No. of genes	No. of correct pred.	Sp⁺(%)/Sn⁺⁺(%)	No. of partial correct gene	Discrepancy*	No. of missing genes	No. of mis-predicted genes	No. of new genes	Geno-typing
	Ref. Seq	2376	3177
	VIGOR		3178	3169	99.40/99.9	3	5	0	1	0	Yes
Flu	FLAN		3149	3124	99.2/98.33	6	57	N/A	9	0	Yes
	GeneMarkS		2754	1119	40.63/35.22	1288		770	347	0	No
	ZCURVE_V		2809	2296	81.74/72.27	40		841	473	0	No
	Ref. Seq.	1166	1158
	VIGOR		1202	1199	99.75/99.75	3		0	0	44	Yes
Rtv
	GeneMarkS		1208	378	31.29/32.64	776		5	54	1	No
	ZCURVE_V		1171	1113	95.05/96.11	45		1	13	1	No

⁺. Specificity;⁺⁺ Sensitivity. *. Discrepancy cases between this prediction and GenBank annotation.

ISSN: 1471-2105