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Table 2 Comparative analysis of the annotations in GenBank and predictions by VIGOR, GeneMarkS and ZCURVE_V of RNA viruses, coronaviruses (CoV), SARS coronaviruses (SARS) and rhinoviruses (Rhv)

From: VIGOR, an annotation program for small viral genomes

   No. of gen. No. of genes No. of correct pred. Sp(%)/Sn(%) No. of partial correct genes No. of missing genes No. of mis-Pred. genes No. of new genes Pred. mat. pep.
  Ref. Seq. 38 341        
  VIGOR   354 353 99.72/99.44 1 1 0 14 No
CoV           
  GeneMarkS   314 247 78.66/69.58 53 48 14 7 No
  ZCURVE_V   339 256 75.52/72.11 50 34 26 7 No
  Ref. Seq. 102 1322        
  VIGOR   1447 1447 100/99.93 0 1 0 127 Yes
SARS           
  GeneMarkS   941 701 74.50/48.41 119 523 121 21 No
  ZCURVE_V   1204 1034 85.88/71.41 107 257 63 76 No
  Ref. Seq. 36 36        
  VIGOR   36 36 100/100 0 0 0 0 Yes
Rhv           
  GeneMarkS   45 32 71.11/88.89 4 0 9 0 No
  ZCURVE_V   77 30 38.96/83.33 6 0 41 0 No