Figure 9
From: On the Choice and Number of Microarrays for Transcriptional Regulatory Network Inference
Evaluation of BH-FDR control for correlation-based TRNI. Empirical vs. nominal FDR for correlation-based TRNI. In all cases, correlation-based TRNI was applied to the full data set, with edge selection using nominal n, n eff , or other values for n (n est ) to compute p-values for the BH-FDR analysis. The ideal case of y = x was included for comparison (dotted black line). Difference from ideal (DFI) was quantified as the area under a plot of the absolute difference between a given curve and the ideal case.