BMC Bioinformatics

Table 2 Method parameters for case studies

From: Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks

	The SS method							The ANN method
	α	β	X1	X2	X3	X4	X5	v _i	θ	k	X1	X2	X3	X4	X5
Case A
X1	0.0	0.3	-	-	-	-	-	1.0	4.0	0.3	-	-	-	-	-
X2	1.0	0.3	2.0	-	-	-	-	1.0	4.0	0.3	5.0	-	-	-	-
X3	1.0	0.3	-	2.0	-	-	-	1.0	4.0	0.3	-	5.0	-	-	-
X4	1.0	0.3	-	-	2.0	-	-	1.0	4.0	0.3	-	-	5.0	-	-
X5	1.0	0.3	-	-	-	2.0	-	1.0	4.0	0.3	-	-	-	5.0	-
Case B
X1	0.0	0.3	-	-	-	-	-	1.0	4.5	0.3	-	-	-	-	-
X2	1.0	0.3	1.5	-	-	-	-	1.0	4.5	0.3	7.0	-	-	-	-
X3	1.0	0.3	-	2	-	-	-	1.0	4.5	0.3	-	6.0	-	-	-
X4	1.0	0.3	-	3	-	-	-	1.0	4.5	0.3	-	4.0	-	-	-
X5	1.0	0.3	-	-	2	3	-	1.0	4.5	0.3	-	-	4.0	6.0	-
Case C
X1	0.0	0.3	-	-	-	-	-	1.0	4.5	0.3	-	-	-	-	-
X2	1.0	0.3	1.5	-	0.6	-	-0.3	1.0	4.5	0.3	7.0	-	7.0	-	-8.0
X3	1.0	0.3	-	2	-	-	-	1.0	4.5	0.3	-	6.0	-	-	-
X4	1.0	0.3	-	3	-	-	-	1.0	4.5	0.3	-	4.0	-	-	-
X5	1.0	0.3	-	-	2	3	-	1.0	4.5	0.3	-	-	4.0	6.0	-
The GRLOT method
	V	k	X1 n	X1 ki	X2 n	X2 ki	X3 n	X3 ki	X4 n	X4 ki	X5 n	X5 ki
Case A
X1	0.0	0.3	-	-	-	-	-	-	-	-	-	-
X2	1.0	0.3	1.5	1.1	-	-	-	-	-	-	-	-
X3	1.0	0.3	-	-	1.5	1.1	-	-	-	-	-	-
X4	1.0	0.3	-	-	-	-	1.5	1.1	-	-	-	-
X5	1.0	0.3	-	-	-	-	-	-	1.5	1.1
Case B
X1	0.0	0.3	-	-	-	-	-	-	-	-	-	-
X2	1.0	0.3	1.5	0.8	-	-	-	-	-	-	-	-
X3	1.0	0.3	-	-	2.5	0.5			-
X4	1.0	0.3	-	-	1.5	0.8		-
X5	1.0	0.3	-	-	-	-	1.5	0.8	2.5	0.5
Case C
X1	0.0	0.3	-	-	-	-	-	-	-	-	-	-
X2	1.0	0.3	1.5	0.8	-	-	3.5	0.1	-	-	-1.5	2.0
X3	1.0	0.3	-	-	2.5	0.5	-	-	-	-	-	-
X4	1.0	0.3	-	-	1.5	0.8	-	-	-	-	-	-
X5	1.0	0.3	-	-	-	-	1.5	0.8	2.5	0.5	-	-

Parameters for each of the SS, ANN and GRLOT methods as used in case study models A, B and C.

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ISSN: 1471-2105

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