Figure 4

Hierarchical clustering of SNPs among six Listeria monocytogenes strains. Hierarchical clustering of the SNPs within the core genome of the Listeria monocytogenes strains F6900, 10403S, Clip81459, EGD-e, HCC23 and 4bF2365. The core genome was generated using the Panseq Core/Accessory Genome Analysis module with fragmentation size of 500 bp and sequence identity cutoff value of 85%. The dendrogram was produced by the statistical package R, using the hclust function with Euclidean distance and average linkage after substituting the ACTG character values with 0,1,2,3 respectively; black = "A", white = "T", red = "C" and green = "G".