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Table 3 Similarity for each phylogenetic tree construction algorithm

From: Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins

Tree construction

Graph

Real

Similarity, Γ

   

Node shuffle

Network shuffle

PAML

CORE

0.74

0.747

[0.737,0.757]

0.742

[0.737,0.747]

 

DIP

0.75

0.760

[0.750,0.769]

0.743

[0.740,0.746]

 

LC

0.74

0.750

[0.741,0.760]

0.741

[0.739,0.743]

PROML

CORE

0.84

0.848

[0.839,0.857]

0.846

[0.843,0.849]

 

DIP

0.84

0.841

[0.834,0.849]

0.838

[0.837,0.840]

 

LC

0.84

0.831

[0.822,0.839]

0.837

[0.836,0.839]

PARS

CORE

0.90

0.901

[0.893,0.909]

0.899

[0.896,0.903]

 

DIP

0.90

0.893

[0.884,0.900]

0.893

[0.891,0.895]

 

LC

0.89

0.882

[0.874,0.890]

0.893

[0.891,0.895]

  1. Average similarity, Γ, for each phylogenetic tree construction algorithm, for the empirical graphs. The results for node shuffle and network shuffle graph ensembles are given along with the 95% sample range for the similarity trait.