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Table 3 Similarity for each phylogenetic tree construction algorithm

From: Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins

Tree construction Graph Real Similarity, Γ
    Node shuffle Network shuffle
PAML CORE 0.74 0.747 [0.737,0.757] 0.742 [0.737,0.747]
  DIP 0.75 0.760 [0.750,0.769] 0.743 [0.740,0.746]
  LC 0.74 0.750 [0.741,0.760] 0.741 [0.739,0.743]
PROML CORE 0.84 0.848 [0.839,0.857] 0.846 [0.843,0.849]
  DIP 0.84 0.841 [0.834,0.849] 0.838 [0.837,0.840]
  LC 0.84 0.831 [0.822,0.839] 0.837 [0.836,0.839]
PARS CORE 0.90 0.901 [0.893,0.909] 0.899 [0.896,0.903]
  DIP 0.90 0.893 [0.884,0.900] 0.893 [0.891,0.895]
  LC 0.89 0.882 [0.874,0.890] 0.893 [0.891,0.895]
  1. Average similarity, Γ, for each phylogenetic tree construction algorithm, for the empirical graphs. The results for node shuffle and network shuffle graph ensembles are given along with the 95% sample range for the similarity trait.