Table 2 SeqAnt sequence annotation total sites and execution time.
From: SeqAnt: A web service to rapidly identify and annotate DNA sequence variations
| Â | Okou et al. 2007 | Caspary et al. 2007 | Okou et al. 2009 | Ng et al. 2010 | Levy et al. 2007 | Kim et al. 2009 |
|---|---|---|---|---|---|---|
Genome | Human | Mouse | Human | Human | Human | Human |
Size of Region Sequenced (kb) | 48 | 683 | 329 | ~26,000 | ~3,000,000 | ~3,000,000 |
Individuals Sequenced | 1 | 1 | 10 | 8 | 1 | 1 |
Total Variant Sites Annotated | 37 | 1375 | 13,739 | 61,451 | 3,296,384 | 3,439,107 |
Execution Time | 0.17s | 0.72s | 4.58s | 27.28s | 28 m 45.3s | 28 m 49.8s |
Exonic Replacement SNPs | 1 | 2 | 28 | 31,154 | 8,955 | 9,746 |
Exonic Silent SNPs | 1 | 0 | 9 | 30,233 | 9,692 | 10,818 |
Exonic Indel Sites | 0 | 9 | 243 | 0 | 365 | 0 |
UTR SNPs | 4 | 2 | 91 | 1,931 | 26,751 | 30,798 |
UTR Indels | 0 | 2 | 481 | 0 | 3,238 | 0 |
Intronic SNPs | 21 | 46 | 1,347 | 70 | 1,109,359 | 1,246,439 |
Intronic Indel Sites | 0 | 309 | 5,803 | 0 | 139,192 | 0 |
Intergenic SNPs | 10 | 289 | 1060 | 18 | 1,921,438 | 2,141,948 |
Intergenic Indel Sites | 0 | 716 | 4683 | 0 | 205,709 | 0 |