ModuleOrganizer: detecting modules in families of transposable elements

BMC Bioinformatics

Table 1 Summary structures detected with softwares

	Duplication	Palindrome	Truncated	Reference Sequence
ModuleOrganizer	X	X	X
DomainOrganizer	X
VISTA				X
GATA		X		X
GraphDNA
Recon	x	x		X

The table summarizes the different structural modules that can be detected by the different tested softwares. The last column indicates if the software needs a reference sequence or not. Big crosses in cells indicate the software displays the corresponding type of structure, small ones mean the structure could be deduced from the results.

ISSN: 1471-2105