Skip to main content

Table 2 Selected probe information.

From: Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development

Targeted Gene Probe name Sequence Number of unique DNA sequences used for the probe design Number of specific probes Positions on the reference gene sequence
phnA1a phnA1a_MD_A GTITGYAAYTAYCAYGGITGGGT 5 256 294 - 316
  phnA1a_MD_B CAYGARATHGARGTITGGACITA 4 384 957 - 979
phnA2a phnA2a_MD_A GARGAYATHCAYTAYTGGATGCC 2 48 123 - 145
  phnA2a_MD_B GGICARGTITGGATGGARGAYCC 3 128 261 - 284
ahdA1c ahdA1c_MD_A GARTGYGTITAYCAYCARTGGGC 3 128 318 - 340
  ahdA1c_MD_B GAYGCIGCIGAYAARCARGCITA 2 1024 771 - 793
ahdA2c ahdA2c_MD_A GAYGAYMGIYTIGARGARTGGCC 3 1024 081 - 103
  ahdA2c_MD_B ATHGAYACIATGATGGTIMGICC 3 768 459 - 481
bphB bphB_MD_A AAYGTIGGIATHTGGGAYTWYAT 3 768 261 - 283
  bphB_MD_B AAYBTIAARGGITAYTTYTTYGG 3 384 348 - 370
bphC bphC_MD_A CCITAYTTYATGCAYTGYAAYGA 5 128 558 - 580
  bphC_MD_B TGGYTITGGGARTTYGGITGGGG 4 128 777 - 799
bphA3 bphA3_MD_A ATHATHGARTGYCCITTYCAYGG 2 576 180 - 202
  bphA3_MD_B ATHGAIGAYGGITGGGTITGYAT 3 768 279 - 302
ahdA4 ahdA4_MD_A GCIAAYGTICCIGAYAAYTTYTT 2 1024 159 - 181
  ahdA4_MD_B CARGARACITAYCARAAYGCIGC 2 512 867 - 889
  1. Total number of specific probes from the probe degenerate sequence and relative positions on the reference gene sequence for each targeted gene are described._Numbers of unique DNA sequences, coding for studied enzymes are also given to highlight that our probes target known genes but also unknown ones. Nomenclature: M: A and C; R: A and G; W: A and T; S: G and C; Y: C and T; H: A, C and T; D: A, G and T; B: G, T and C; I: A, C, G and T.