Predicting phenotypic traits of prokaryotes from protein domain frequencies

BMC Bioinformatics

Table 3 Generalization performance

Phenotype	sensitivity	specificity	harmonic mean	aucROC	aucPRC
Endospores	0.913	0.875	0.894	0.984	0.959
Gram stain	0.993	0.907	0.948	0.986	0.968
Motility	0.942	0.874	0.906	0.927	0.944
Oxygen Requirement	0.992	0.963	0.977	0.993	0.987
average	0.960	0.904	0.931	0.972	0.965

Generalization performance using an independent test data set (for details see section "Methods"). The first column indicates the phenotype category, the remaining columns represent the prediction accuracy in terms of different performance measures. Here, "aucROC" and "aucPRC" correspond to "area under ROC curve" and "area under PRC curve", respectively.

ISSN: 1471-2105