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Table 5 Discriminative domain families for phenotype category "Motility"

From: Predicting phenotypic traits of prokaryotes from protein domain frequencies

rank weight # groups Pfam-ID Pfam description
1 0.008 18 PF00015 Methyl-accepting chemotaxis protein (MCP) signaling domain
2 0.007 20 PF00672 HAMP domain
3 0.007 14 PF00460 Flagella basal body rod protein
4 0.006 12 PF08345 Flagellar M-ring protein C-terminal
5 0.006 15 PF06429 Domain of unknown function (DUF1078)
6 0.006 14 PF00700 Bacterial flagellin C-terminus
7 0.006 16 PF01312 FlhB HrpN YscU SpaS Family
8 0.006 11 PF02120 Flagellar hook-length control protein
9 0.006 14 PF02049 Flagellar hook-basal body complex protein FliE
10 0.006 14 PF00669 Bacterial flagellin N-terminus
  1. List of the 10 most (positive) discriminative domain families associated with the RLSC model for the phenotype category "Motility" (see also section "Methods"). The first column indicates the rank, the second column shows the discriminative model weight. The third column denotes the phylogenetic width of a particular domain family. The fourth and fifth column correspond to the Pfam ID and family description associated with a particular domain family. The table with the 50 most positively and negatively discriminative domain families can be found in additional file 2.