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Table 2 Running time (s) for fastFVA versus a direct FVA implementation

From: Computationally efficient flux variability analysis

  GLPK CPLEX
  FVA fastFVA FVA fastFVA
T. maritima 10.3 0.3 4.3 0.2
P. putida 37.0 1.1 12.3 0.3
E. coli 340.0 2.5 119.5 1.5
Human 2217.8 12.5 659.8 5.4
E-matrix 12263.1 184.0 9514.6 108.1
E coupled -matrix > 120 h 1919.4 30630.1 1421.7
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BMC Bioinformatics

ISSN: 1471-2105

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