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Table 16 Relative ranking of affinity scoring schemes for complex detection

From: MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure

PPI network

 

Wodak

MIPS

Aloy

  
 

Method

F1

Norm

F1

Norm

F1

Norm

Total

Norm

MCL

Cons3.19

0.573

1.000

0.407

1.000

0.567

0.970

2.970

1.000

 

FSW(G+K)

0.541

0.944

0.393

0.965

0.585

1.000

2.909

0.980

 

ICD(G+K)

0.498

0.871

0.370

0.908

0.543

0.928

2.706

0.911

 

Boot0.094

0.426

0.744

0.299

0.733

0.400

0.684

2.161

0.728

MCLO

Cons3.19

0.606

1.000

0.471

1.000

0.575

0.939

2.939

1.000

 

ICD(G+K)

0.533

0.879

0.412

0.875

0.572

0.934

2.688

0.914

 

FSW(G+K)

0.513

0.847

0.376

0.798

0.612

1.000

2.645

0.900

 

Boot0.094

0.424

0.700

0.267

0.567

0.392

0.641

1.908

0.649

MCL-CAw

Cons3.19

0.614

1.000

0.487

1.000

0.576

0.921

2.921

1.000

 

FSW(G+K)

0.576

0.938

0.423

0.868

0.625

1.000

2.806

0.961

 

ICD(G+K)

0.567

0.923

0.450

0.923

0.578

0.925

2.771

0.949

 

Boot0.094

0.447

0.728

0.282

0.579

0.416

0.666

1.973

0.675

CMC

Cons3.19

0.604

1.000

0.479

1.000

0.588

1.000

3.000

1.000

 

Boot0.094

0.577

0.955

0.366

0.764

0.515

0.877

2.597

0.866

 

ICD(G+K)

0.531

0.880

0.403

0.843

0.480

0.816

2.538

0.846

 

FSW(G+K)

0.484

0.801

0.338

0.705

0.465

0.791

2.297

0.766

HACO

FSW(G+K)

0.581

1.000

0.396

1.000

0.609

1.000

3.000

1.000

 

Boot0.094

0.572

0.984

0.380

0.961

0.585

0.961

2.906

0.969

 

ICD(G+K)

0.565

0.972

0.378

0.956

0.593

0.973

2.902

0.967

 

Cons3.19

0.495

0.852

0.379

0.957

0.502

0.824

2.634

0.878

  1. Ranking obtained from normalized F1 values.