Table 19 Complexes derived with lesser accuracy or missed by MCL-CAw due to affinity scoring
Matched benchmark complex | #Proteins in complexes from | #Incorrect proteins in complexes from ICD(G+K) | Accuracies (Jaccard scores) | ||||
|---|---|---|---|---|---|---|---|
Name | #Proteins | G+K | ICD(G+K) | Missed | Addnl | G+K | ICD(G+K) |
Kornbergs SRB | 25 | 24 | 23 | 2 | 0 | 0.960 | 0.920 |
SWI/SNF | 12 | 11 | 8 | 4 | 0 | 0.769 | 0.667 |
TRAPP | 10 | 10 | 9 | 1 | 0 | 1.000 | 0.900 |
19/22 S reg | 22 | 20 | 27 | 0 | 5 | 0.909 | 0.815 |
TRAMP | 3 | 4 | 7 | 0 | 4 | 0.750 | 0.429 |
Alpha-1,6 | 5 | 9 | 11 | 0 | 6 | 0.556 | 0.455 |
eIF3 | 7 | 8 | 14 | 1 | 8 | 0.500 | 0.400 |
Protein phosp | 3 | 5 | 9 | 0 | 4 | 0.600 | 0.333 |
Cdc73p/Paf1p | 7 | 7 | 18 | 0 | 11 | 0.556 | 0.388 |
Chs5p/Arf-1 | 6 | 8 | 10 | 2 | 6 | 0.556 | 0.400 |