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Figure 1 | BMC Bioinformatics

Figure 1

From: Geoseq: a tool for dissecting deep-sequencing datasets

Figure 1

Geoseq Architecture - Deep sequencing datasets are retrieved from public datastores such as NCBI's SRA. The metadata gets processed and organized in a database. The sequences are indexed using a suffix array. The suffix array indexes are saved to a storage cluster. The client can browse or search the metadata via a browser. When the client selects a dataset of interest, an analysis request is submitted to the processing cluster through a JSON service. The processing cluster retrieves the suffix array indexes from the storage cluster and performs the analysis. All results are returned to the browser either as graphs or as downloadable links.

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