Table 8 Comparison of the number of groups detected in the C2.KEGG category and of the number of common detections in three datasets
0.010 | A2. fixed | Faeri. fixed.null | Faeri. fixed.perms | GSA. mean* | GSA. absmean* | GSA. maxmean* | Globaltest. asymptotic | Globaltest. gamma | Globaltest. permutations | Gsea. pval | Gsea. fdr | Samgs. pval | Samgs. qval |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Emexp445 | 62 | 7 | 14 | 14 | 5 | 19 | 0 | 8 | 0 | 0 | 0 | 0 | 0 |
GSE-1056 | 36 | 9 | 51 | 5 | 0 | 8 | 1 | 15 | 0 | 0 | 0 | 0 | 0 |
GSE-4086 | 93 | 89 | 94 | 49 | 38 | 62 | 0 | 0 | 0 | 0 | 0 | NA | NA |
Emexp445-GSE-1056 | 5 | 0 | 6 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Emexp445-GSE-4086 | 24 | 5 | 9 | 8 | 0 | 11 | 0 | 0 | 0 | 0 | 0 | NA | NA |
GSE-1056-GSE-4086 | 21 | 7 | 37 | 4 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | NA | NA |
Emexp445-GSE-1056-GSE-4086 | 4 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA |
0.050 | A2. fixed | Faeri. fixed.null | Faeri. fixed.perms | GSA. mean* | GSA. absmean* | GSA. maxmean* | Globaltest. asymptotic | Globaltest. gamma | Globaltest. permutations | Gsea. pval | Gsea. fdr | Samgs. pval | Samgs. qval |
Emexp445 | 62 | 18 | 42 | 14 | 5 | 23 | 26 | 45 | 0 | 0 | 0 | 0 | 0 |
GSE-1056 | 51 | 27 | 80 | 8 | 2 | 12 | 33 | 70 | 40 | 11 | 0 | 15 | 69 |
GSE-4086 | 119 | 119 | 142 | 49 | 38 | 62 | 32 | 185 | 0 | 0 | 0 | NA | NA |
Emexp445-GSE-1056 | 15 | 6 | 34 | 1 | 0 | 0 | 4 | 20 | 0 | 0 | 0 | 0 | 0 |
Emexp445-GSE-4086 | 48 | 14 | 37 | 8 | 0 | 13 | 13 | 44 | 0 | 0 | 0 | NA | NA |
GSE-1056-GSE-4086 | 31 | 23 | 71 | 4 | 1 | 6 | 7 | 69 | 0 | 0 | 0 | NA | NA |
Emexp445-GSE-1056-GSE-4086 | 13 | 4 | 31 | 1 | 0 | 0 | 2 | 20 | 0 | 0 | 0 | NA | NA |