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Table 6 Comparison of Compression and Decompression Timing

From: Data structures and compression algorithms for high-throughput sequencing technologies

 

Dataset 1

Dataset 2

Dataset 3

Compression (sec)

   

   GenCompress

20

5

111

   gzip

10

13

70

   bzip2

78

20

422

   7zip

107

77

447

Decompression (sec)

   

   GenCompress

2

1

15

   gzip

2

1

13

   bzip2

7

4

53

   7zip

4

2

21