Skip to main content

Table 2 Effectiveness of the approach on synthetic data

From: Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regulatory structures

 

pam

mclust

consclust

 

# of sel. genes

# of clusters +

Accuracy*

(%)

# of sel. genes

# of clusters

Accuracy

(%)

# of sel. genes

# of clusters

Accuracy

(%)

Dataset 1

122

7|6

74.8|82.8

155

9|7

87.8|84.1

68

4|4

100|100

Dataset 2

337

6|6

100|100

343

6|6

100|100

330

6|6

100|100

Dataset 3

374

6|6

100|100

380

6|6

100|100

374

6|6

100|100

Dataset 4

376

15|7

68.8|94.6

375

13|7

80.1|94.2

302

11|7

80.9|92.4

  1. +: only clusters with more than 5 genes;*: the accuracy is estimated on the selected domain; the number of clusters and the accuracy are formatted as 'before merging' | 'after merging'
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us