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Table 3 Characterization of significant transcriptional modules

From: Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regulatory structures

Transcriptional modules

1

2

3

4

5

6

Number of genes

97

45

34

71

14

54

Expression pattern in acute*

DD

UU

U

DD

U

D

UU

D

UU

DD

DD

UU

U

DD

U

Expression pattern in chronic*

D

UU

D

U

DD

U

UUUU

U

DD

U

DDDD

UU

DD

  1. *: Patterns consist of one-phase regulation (up-down/down-up), two-phase regulation (up-down-up/down-up-down) or simply up- or down-regulation. Details are listed in expression patterns in Additional File 2.
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BMC Bioinformatics

ISSN: 1471-2105

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