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Figure 3 | BMC Bioinformatics

Figure 3

From: Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function

Figure 3

SIMBAL results on ABC permeases versus a urea metabolism partition of the Pfam CL0142 clan. A) SIMBAL triangle heat map for the Corynebacterium glutamicum UrtB protein (NCgl0894) constructed of stacked rows of output from windows of size 5 amino acids up to the full length of the protein, colored by the SIMBAL score. Peaks at window sizes 15 and 30 are indicated in blue boxes. B) A portion of the heat map for the C. glutamicum UrtC protein (NCgl0895). C) A heat map for the non-urea transporting C. glutamicum NCgl0030 permease at exaggerated scale illustrating negligible response. D) SIMBAL score plot of UrtB (blue) and NCgl0030 (green) at a window size of 30 amino acids.

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BMC Bioinformatics

ISSN: 1471-2105

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