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Table 10 CCRaVAT/QuTie Significant Region Output File

From: CCRaVAT and QuTie - enabling analysis of rare variants in large-scale case control and quantitative trait association studies

Marker

Chromosome

Position

MAF

rs715643

1

1212830

0.042

rs3934834

1

1045729

0.163

rs3737728

1

1061338

0.301

rs6687776

1

1070488

0.158

rs9651273

1

1071463

0.295

rs4970405

1

1088878

0.086

rs12726255

1

1089873

0.125

rs2298217

1

1104902

0.133

rs4970357

1

1116987

0.093

rs4970362

1

1134661

0.378

rs9660710

1

1139265

0.068

rs4970420

1

1146396

0.192

rs1320565

1

1159781

0.095

rs11260549

1

1161717

0.116

rs9729550

1

1175165

0.262

rs11721

1

1192554

0.101

rs2887286

1

1196054

0.17

rs3813199

1

1198200

0.106

rs3766186

1

1202358

0.105

rs7515488

1

1203727

0.158

rs6675798

1

1216520

0.105

  1. This file provides summary statistics for all SNPs that reside within a gene or region with p value ≤ the p value set by the -pout command line option. The file is tab-delimited with 5 columns: Marker name, Chromosome, bp position of Marker, and the Minor Allele Frequency (MAF) considering all analyzed individuals.
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BMC Bioinformatics

ISSN: 1471-2105

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