|
Gene/Wind
|
Chr
|
Start
|
End_Pos
|
N_SNPs
|
CaseRV
|
CaseNoRV
|
ContRV
|
ContNoRV
|
ChiSq
|
P-val
|
FisherExPval
|
|---|
|
MGC33212
|
3
|
197456409
|
197583455
|
(10/1)
|
2
|
1909
|
31
|
2903
|
15.5
|
0.000083
|
1.96E-05
|
|
PPIC
|
5
|
122336979
|
122450324
|
(12/6)
|
26
|
1877
|
7
|
2906
|
21.44
|
0.0000037
|
5.94E-06
|
|
NR3C1
|
5
|
142589325
|
142813087
|
(24/2)
|
8
|
1912
|
47
|
2869
|
14.71
|
0.00013
|
7.28E-05
|
|
ADAMTS2
|
5
|
178423474
|
178754935
|
(30/2)
|
62
|
1859
|
44
|
2885
|
16.15
|
0.000059
|
No < 30
|
|
3.8_1.5
|
6
|
29790873
|
29892049
|
(43/2)
|
26
|
1890
|
10
|
2920
|
16.21
|
0.000057
|
9.74E-05
|
|
KLF6
|
10
|
3761233
|
3867455
|
(14/2)
|
14
|
1907
|
1
|
2931
|
18.18
|
0.00002
|
2.13E-05
|
- This file provides summary statistics for all genes that achieved a p value ≤ the p value set by the -pout command line option. The summary file is a tab-delimited file with 12 columns: Gene/Window name, Chromosome, Starting bp position, End bp position, Number of SNPs in the Gene/Window, Number of cases with low frequency/rare variant minor alleles, Number of cases without low frequency/rare variant minor alleles, Number of controls with low frequency/rare variant minor alleles, Number of controls without low frequency/rare variant minor alleles, Chi-Squared Value, Chi-Squared p value, Fisher exact p value.
