|
Gene
|
Start
|
End
|
(SNPs/RV)
|
QT+RV
|
QT-RV
|
QT+RV_Av
|
QT-RV_Av
|
RegPval
|
BetaCoef
|
StEr
|
[lCI - uCI]
|
T
|
Ttest_Pval
|
|---|
|
MIB2
|
924412
|
1025537
|
(20/1)
|
4
|
597
|
9.014
|
-0.137
|
0.222
|
-9.151
|
7.484
|
[-23.819 - 5.517]
|
1.223
|
0.111
|
|
OR4G11P
|
938946
|
1039986
|
(25/1)
|
4
|
597
|
9.014
|
-0.137
|
0.222
|
-9.151
|
7.484
|
[-23.819 - 5.517]
|
1.223
|
0.111
|
|
MMP23B
|
945587
|
1081419
|
(43/6)
|
75
|
281
|
3.308
|
-0.354
|
0.06
|
-3.662
|
1.94
|
[-7.484 - 0.159]
|
1.884
|
0.03
|
|
MMP23A
|
983671
|
1097098
|
(46/7)
|
89
|
280
|
2.929
|
-0.493
|
0.059
|
-3.423
|
1.807
|
[-6.983 - 0.138]
|
1.89
|
0.03
|
|
CDC2L2
|
997120
|
1097869
|
(43/7)
|
89
|
280
|
2.929
|
-0.493
|
0.059
|
-3.423
|
1.807
|
[-6.983 - 0.138]
|
1.89
|
0.03
|
|
LOC440748
|
1007128
|
1117407
|
(47/8)
|
115
|
260
|
2.73
|
-0.135
|
0.085
|
-2.865
|
1.659
|
[-6.134 - 0.404]
|
1.724
|
0.04
|
|
NBPF20
|
1062320
|
1169359
|
(32/10)
|
159
|
224
|
0.713
|
-0.169
|
0.558
|
-0.882
|
1.505
|
[-3.847 - 2.082]
|
0.588
|
0.28
|
|
CCNL2
|
1105000
|
1211164
|
(35/14)
|
150
|
523
|
-1.291
|
0.224
|
0.281
|
1.515
|
1.403
|
[-1.235 - 4.266]
|
-1.081
|
0.14
|
|
OR4F29
|
1128812
|
1232012
|
(30/17)
|
142
|
437
|
-1.402
|
0.231
|
0.258
|
1.633
|
1.442
|
[-1.193 - 4.459]
|
-1.133
|
0.13
|
|
LOC440551
|
1136630
|
1239435
|
(30/17)
|
143
|
443
|
-1.407
|
0.204
|
0.262
|
1.611
|
1.435
|
[-1.201 - 4.423]
|
-1.123
|
0.13
|
|
LOC440552
|
1142212
|
1257334
|
(28/15)
|
139
|
444
|
-1.48
|
0.156
|
0.261
|
1.636
|
1.454
|
[-1.214 - 4.485]
|
-1.126
|
0.13
|
|
FAM87B
|
1157568
|
1260341
|
(22/14)
|
110
|
449
|
-1.612
|
0.209
|
0.254
|
1.822
|
1.596
|
[-1.306 - 4.949]
|
-1.142
|
0.13
|
- This file provides summary statistics for all genes analyzed on each chromosome and is the most comprehensive output file. The summary file is a tab-delimited file with 14 columns: Gene/Window name, Starting bp position, End bp position, Number of SNPs in the Gene/Window, Number of individuals with low frequency/rare variant minor alleles, Number of individuals without low frequency/rare variant minor alleles, Mean QT value for individuals with low frequency/rare variant minor alleles, Mean QT value for individuals without low frequency/rare variant minor alleles, Linear regression p value, Beta coefficient from linear regression, Standard Error of the Beta coefficient, The lower and upper 95% Confidence Interval s of Beta, T-statistic, and T-statistic p value.
