Table 2 Datasets used in the case study meta-analysis
From: PathEx: a novel multi factors based datasets selector web tool
Meta-dataset Name | Experimental conditions | GeneChip models | Datasets |
|---|---|---|---|
Meta-dataset 1 | Primary tumor, normal tissue, poorly metastatic tissue VS. metastasis, highly metastatic tissue | HG-U133A | E-GEOD-1323, E-GEOD-2280, GSE2280, GSE2603, GSE4840 (HG-U133A), GSE7929, GSE7930, GSE7956, GSE8401 |
Meta-dataset 2 | Primary tumor, poorly metastatic tissue VS. metastasis, highly metastatic tissue | HG-U133A | E-GEOD-1323, E-GEOD-2280, GSE2280, GSE2603, GSE7929, GSE7930, GSE7956, GSE8401 |
Meta-dataset 3 | Primary tumor, normal tissue VS. metastasis | HG-U133A | E-GEOD-1323, E-GEOD-2280, GSE2280, GSE2603, GSE4840 (HG-U133A), GSE7929, GSE7956, GSE8401 |
Meta-dataset 4 | Primary tumor VS. metastasis | HG-U133A | E-GEOD-1323, E-GEOD-2280, GSE2280, GSE2603, GSE4840 (HG-U133A), GSE7929, GSE7956, GSE8401 |
Meta-dataset 5 | Primary tumor VS. metastasis | HG-U133A | E-GEOD-1323, E-GEOD-2280, GSE2280, GSE2603, GSE7929, GSE7956, GSE8401 |
Meta-dataset 6 | Squamous cell carcinoma of the oral cavity VS. corresponding lymph node metastases | HG-U133A | E-GEOD-2280, GSE2280 |
Meta-dataset 7 | Normal melanocyte culture, poorly metastatic melanoma, primary melanoma VS. culture of cutaneous metastasis of melanoma, highly metastatic melanoma, melanoma metastasis | HG-U133A | GSE4840 (HG-U133A), GSE7929, GSE7956, GSE8401 |
Meta-dataset 8 | Poorly metastatic melanoma, primary melanoma VS. culture of cutaneous metastasis of melanoma, highly metastatic melanoma, melanoma metastasis | HG-U133A | GSE4840 (HG-U133A), GSE7929, GSE7956, GSE8401 |
Meta-dataset 9 | Poorly metastatic melanoma, primary melanoma VS. highly metastatic melanoma, melanoma metastasis | HG-U133A | GSE7929, GSE7956, GSE8401 |
Meta-dataset 10 | Primary tumor VS. metastasis | HG-U95Av2 | E-MEXP-44 (HG-U95Av2), GSE6919 (HG-U95Av2) |
Meta-dataset 11 | Hypoxia VS. normoxia | HG-U95Av2 | GSE1056 |
Meta-dataset 12 | Primary tumor, normoxia VS. metastasis, hypoxia | HG-U133Plus2.0 | GSE3325, GSE4086, GSE4843, GSE6369 |
Meta-dataset 13 | Primary tumor VS. metastasis | HG-U133Plus2.0 | GSE3325, GSE4843, GSE6369 |
Meta-dataset 14 | Primary prostate cancer VS. metastases | HG-U133Plus2.0 | GSE3325, GSE6369 |