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Table 2 Datasets used in the case study meta-analysis

From: PathEx: a novel multi factors based datasets selector web tool

Meta-dataset Name Experimental conditions GeneChip models Datasets
Meta-dataset 1 Primary tumor, normal tissue, poorly metastatic tissue VS. metastasis, highly metastatic tissue HG-U133A E-GEOD-1323, E-GEOD-2280, GSE2280, GSE2603, GSE4840 (HG-U133A), GSE7929, GSE7930, GSE7956, GSE8401
Meta-dataset 2 Primary tumor, poorly metastatic tissue VS. metastasis, highly metastatic tissue HG-U133A E-GEOD-1323, E-GEOD-2280, GSE2280, GSE2603, GSE7929, GSE7930, GSE7956, GSE8401
Meta-dataset 3 Primary tumor, normal tissue VS. metastasis HG-U133A E-GEOD-1323, E-GEOD-2280, GSE2280, GSE2603, GSE4840 (HG-U133A), GSE7929, GSE7956, GSE8401
Meta-dataset 4 Primary tumor VS. metastasis HG-U133A E-GEOD-1323, E-GEOD-2280, GSE2280, GSE2603, GSE4840 (HG-U133A), GSE7929, GSE7956, GSE8401
Meta-dataset 5 Primary tumor VS. metastasis HG-U133A E-GEOD-1323, E-GEOD-2280, GSE2280, GSE2603, GSE7929, GSE7956, GSE8401
Meta-dataset 6 Squamous cell carcinoma of the oral cavity VS. corresponding lymph node metastases HG-U133A E-GEOD-2280, GSE2280
Meta-dataset 7 Normal melanocyte culture, poorly metastatic melanoma, primary melanoma VS. culture of cutaneous metastasis of melanoma, highly metastatic melanoma, melanoma metastasis HG-U133A GSE4840 (HG-U133A), GSE7929, GSE7956, GSE8401
Meta-dataset 8 Poorly metastatic melanoma, primary melanoma VS. culture of cutaneous metastasis of melanoma, highly metastatic melanoma, melanoma metastasis HG-U133A GSE4840 (HG-U133A), GSE7929, GSE7956, GSE8401
Meta-dataset 9 Poorly metastatic melanoma, primary melanoma VS. highly metastatic melanoma, melanoma metastasis HG-U133A GSE7929, GSE7956, GSE8401
Meta-dataset 10 Primary tumor VS. metastasis HG-U95Av2 E-MEXP-44 (HG-U95Av2), GSE6919 (HG-U95Av2)
Meta-dataset 11 Hypoxia VS. normoxia HG-U95Av2 GSE1056
Meta-dataset 12 Primary tumor, normoxia VS. metastasis, hypoxia HG-U133Plus2.0 GSE3325, GSE4086, GSE4843, GSE6369
Meta-dataset 13 Primary tumor VS. metastasis HG-U133Plus2.0 GSE3325, GSE4843, GSE6369
Meta-dataset 14 Primary prostate cancer VS. metastases HG-U133Plus2.0 GSE3325, GSE6369
  1. Using PathEx features, which allowed combination of samples from different experiment, we automatically created the above datasets.