Skip to main content

Table 1 Properties of MDR families

From: Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement

ID

Name

Size

Swiss-Prot

PCID Avg (StdDev)

Eukaryotic

Bacterial

Archaeal

MDR001

ADH

2217

116

51.24 (19.02)

1315 (59.3%)

895 (40.4%)

6 (0.3%)

MDR002

PTGR

774

17

42.46 (9.64)

253 (32.7%)

518 (66.9%)

3 (0.4%)

MDR003

FAS

706

11

39.07 (9.88)

288 (40.8%)

418 (59.2%)

0 (0.0%)

MDR004

QORX

486

1

47.47 (10.07)

69 (14.2%)

417 (85.8%)

0 (0.0%)

MDR005

PDH

328

18

45.59 (11.81)

181 (55.2%)

146 (44.5%)

1 (0.3%)

MDR006

ZADH2

56

4

51.49 (15.19)

51 (91.1%)

5 (8.9%)

0 (0.0%)

MDR007

MECR

51

9

54.60 (13.15)

51 (100.0%)

0 (0.0%)

0 (0.0%)

MDR008

VAT1

50

6

60.49 (19.60)

48 (96.0%)

2 (4.0%)

0 (0.0%)

MDR009

vertQOR

22

8

70.12 (10.34)

21 (95.5%)

1 (4.5%)

0 (0.0%)

MDR010

CAD

661

32

49.08 (10.02)

329 (49.8%)

330 (49.9%)

2 (0.3%)

MDR011

bpQOR

575

5

47.93 (11.86)

66 (11.5%)

509 (88.5%)

0 (0.0%)

MDR012

YHDH

481

2

53.92 (11.43)

1 (0.2%)

477 (99.2%)

0 (0.0%)

MDR013

FDH

375

4

47.16 (12.56)

29 (7.7%)

346 (92.3%)

0 (0.0%)

MDR014

TDH

351

126

69.40 (16.11)

1 (0.3%)

343 (97.7%)

7 (2.0%)

MDR015

QORL2

319

4

45.25 (8.76)

38 (11.9%)

281 (88.1%)

0 (0.0%)

MDR016

bADH

313

17

60.72 (15.62)

1 (0.3%)

312 (99.7%)

0 (0.0%)

MDR017

 

279

8

51.97 (8.93)

2 (0.7%)

277 (99.3%)

0 (0.0%)

MDR018

 

194

1

47.22 (10.60)

48 (24.7%)

146 (75.3%)

0 (0.0%)

MDR019

 

136

0

60.51 (12.37)

18 (13.2%)

118 (86.8%)

0 (0.0%)

MDR020

yADH

128

22

63.56 (12.11)

128 (100.0%)

0 (0.0%)

0 (0.0%)

MDR021

YJGB

122

1

69.98 (20.96)

2 (1.6%)

120 (98.4%)

0 (0.0%)

MDR022

giFDH

122

2

63.32 (18.53)

5 (4.1%)

111 (91.0%)

6 (4.9%)

MDR023

 

72

5

52.93 (17.12)

10 (13.9%)

56 (77.8%)

6 (8.3%)

MDR024

 

40

0

52.66 (11.72)

7 (17.5%)

32 (80.0%)

1 (2.5%)

MDR025

yPDH

34

0

65.44 (13.11)

34 (100.0%)

0 (0.0%)

0 (0.0%)

MDR026

yDH

34

0

60.48 (13.13)

34 (100.0%)

0 (0.0%)

0 (0.0%)

MDR027

QORH

34

2

60.28 (10.85)

34 (100.0%)

0 (0.0%)

0 (0.0%)

MDR028

 

29

0

55.36 (9.11)

1 (3.4%)

28 (96.6%)

0 (0.0%)

MDR029

yADH2

29

1

59.02 (15.24)

29 (100.0%)

0 (0.0%)

0 (0.0%)

MDR030

dFAS

28

0

57.51 (16.34)

28 (100.0%)

0 (0.0%)

0 (0.0%)

MDR031

yDH2

28

0

53.43 (12.87)

28 (100.0%)

0 (0.0%)

0 (0.0%)

MDR032

bADH2

26

0

69.59 (17.08)

1 (3.8%)

25 (96.2%)

0 (0.0%)

MDR033

yBDH

23

2

54.51 (12.62)

23 (100.0%)

0 (0.0%)

0 (0.0%)

MDR034

 

23

0

54.57 (14.09)

13 (56.5%)

10 (43.5%)

0 (0.0%)

MDR035

 

22

0

47.17 (10.55)

22 (100.0%)

0 (0.0%)

0 (0.0%)

MDR036

bADH3

21

4

50.26 (15.82)

1 (4.8%)

12 (57.1%)

8 (38.1%)

MDR037

 

20

0

66.14 (13.09)

20 (100.0%)

0 (0.0%)

0 (0.0%)

MDR038

 

20

0

74.56 (12.47)

20 (100.0%)

0 (0.0%)

0 (0.0%)

MDR039

bADH4

150

0

58.99 (10.83)

0 (0.0%)

150 (100.0%)

0 (0.0%)

MDR040

SORE

117

2

61.62 (21.91)

0 (0.0%)

117 (100.0%)

0 (0.0%)

MDR041

BurkDH

114

0

63.89 (15.74)

0 (0.0%)

114 (100.0%)

0 (0.0%)

MDR042

YJJN

114

1

57.50 (18.31)

0 (0.0%)

114 (100.0%)

0 (0.0%)

MDR043

IDND

96

1

55.99 (17.90)

0 (0.0%)

96 (100.0%)

0 (0.0%)

MDR044

 

96

0

54.24 (13.62)

0 (0.0%)

92 (95.8%)

4 (4.2%)

MDR045

 

89

0

56.57 (14.09)

0 (0.0%)

89 (100.0%)

0 (0.0%)

MDR046

RSPB

78

1

72.88 (16.80)

0 (0.0%)

78 (100.0%)

0 (0.0%)

MDR047

 

72

0

58.49 (18.18)

0 (0.0%)

72 (100.0%)

0 (0.0%)

MDR048

GATD

71

2

83.33 (14.94)

0 (0.0%)

71 (100.0%)

0 (0.0%)

MDR049

 

69

0

54.89 (14.55)

0 (0.0%)

69 (100.0%)

0 (0.0%)

MDR050

CCR

67

0

72.88 (15.83)

0 (0.0%)

67 (100.0%)

0 (0.0%)

MDR051

TARJ

63

1

60.87 (21.70)

0 (0.0%)

62 (98.4%)

1 (1.6%)

MDR052

YCJQ

48

2

91.08 (10.57)

0 (0.0%)

48 (100.0%)

0 (0.0%)

MDR053

 

48

0

50.84 (14.22)

0 (0.0%)

48 (100.0%)

0 (0.0%)

MDR054

YDJL

46

1

93.70 (12.44)

0 (0.0%)

46 (100.0%)

0 (0.0%)

MDR055

 

44

0

63.84 (10.29)

0 (0.0%)

44 (100.0%)

0 (0.0%)

MDR056

 

44

0

63.41 (20.64)

0 (0.0%)

44 (100.0%)

0 (0.0%)

MDR057

BCHC

43

2

61.89 (8.07)

0 (0.0%)

43 (100.0%)

0 (0.0%)

MDR058

 

43

0

76.53 (11.52)

0 (0.0%)

43 (100.0%)

0 (0.0%)

MDR059

 

42

0

56.97 (9.37)

0 (0.0%)

42 (100.0%)

0 (0.0%)

MDR060

YPHC

42

1

84.08 (22.01)

0 (0.0%)

42 (100.0%)

0 (0.0%)

MDR061

bBDH

40

0

63.33 (22.56)

0 (0.0%)

40 (100.0%)

0 (0.0%)

MDR062

CCR2

40

0

73.01 (14.76)

0 (0.0%)

40 (100.0%)

0 (0.0%)

MDR063

 

38

0

58.21 (20.04)

0 (0.0%)

38 (100.0%)

0 (0.0%)

MDR064

 

33

0

81.63 (18.31)

0 (0.0%)

33 (100.0%)

0 (0.0%)

MDR065

 

32

0

53.79 (11.72)

0 (0.0%)

31 (96.9%)

1 (3.1%)

MDR066

 

32

1

82.45 (18.25)

0 (0.0%)

32 (100.0%)

0 (0.0%)

MDR067

bQOR

32

0

73.92 (21.12)

0 (0.0%)

32 (100.0%)

0 (0.0%)

MDR068

 

32

0

55.05 (10.93)

0 (0.0%)

32 (100.0%)

0 (0.0%)

MDR069

 

32

0

54.76 (13.41)

0 (0.0%)

30 (93.8%)

2 (6.2%)

MDR070

 

31

0

50.14 (19.08)

0 (0.0%)

31 (100.0%)

0 (0.0%)

MDR071

 

31

0

52.17 (11.37)

0 (0.0%)

31 (100.0%)

0 (0.0%)

MDR072

bDHSO

31

1

65.28 (20.13)

0 (0.0%)

31 (100.0%)

0 (0.0%)

MDR073

bQOR2

31

0

81.84 (19.40)

0 (0.0%)

31 (100.0%)

0 (0.0%)

MDR074

 

30

0

79.07 (19.18)

0 (0.0%)

30 (100.0%)

0 (0.0%)

MDR075

 

29

0

82.92 (18.37)

0 (0.0%)

29 (100.0%)

0 (0.0%)

MDR076

 

29

0

57.41 (13.46)

0 (0.0%)

29 (100.0%)

0 (0.0%)

MDR077

 

28

0

58.92 (10.41)

0 (0.0%)

24 (85.7%)

4 (14.3%)

MDR078

RhobDH

25

0

55.27 (11.23)

0 (0.0%)

25 (100.0%)

0 (0.0%)

MDR079

 

25

0

63.69 (12.82)

0 (0.0%)

25 (100.0%)

0 (0.0%)

MDR080

bPDH

24

0

75.24 (15.12)

0 (0.0%)

24 (100.0%)

0 (0.0%)

MDR081

 

23

0

53.96 (19.57)

0 (0.0%)

23 (100.0%)

0 (0.0%)

MDR082

 

23

0

63.98 (10.48)

0 (0.0%)

23 (100.0%)

0 (0.0%)

MDR083

 

21

0

57.76 (20.40)

0 (0.0%)

9 (42.9%)

12 (57.1%)

MDR084

 

21

0

44.68 (12.83)

0 (0.0%)

21 (100.0%)

0 (0.0%)

MDR085

 

21

0

68.74 (15.71)

0 (0.0%)

21 (100.0%)

0 (0.0%)

MDR086

MycDH

20

0

65.99 (28.08)

0 (0.0%)

20 (100.0%)

0 (0.0%)

  1. This table shows properties of the MDR families for which we have derived HMMs, including its assigned name (if any), size, number of members in the Swiss-Prot database, average percent pairwise sequence identities in the family (and sample standard deviation) and distribution of members over the kingdoms of life (and proportions). See also Additional file 2: mdr-properties for further data. Empty name fields indicate families where the function has not yet been established for any of the members.