Skip to main content

Table 2 Correlation with known families

From: Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement

Family Number Size
ADH MDR001 931 → 2217
CAD MDR010, MDR021 520 → 661, 122
LTD MDR002 427 → 774
TADH MDR016, MDR020, MDR029 330 → 313, 128, 29
YHDH MDR012 295 → 481
BPDH MDR011 229 → 575
PDH MDR005 218 → 328
TDH MDR014 215 → 351
BurkDH MDR041 67 → 114
MCAS, ACR MDR003 58, 25 → 706
MECR MDR007, MDR037 49 → 51, 20
VAT1 MDR008 39 → 50
QOR MDR009 28 → 22
DOIAD - -
QORL - -
RT4I - -
  1. MDR families by name used in [1]. The CAD, TADH and MECR families are now represented by two or three HMMs, and the MCAS and ACR families are now incorporated into a single, much larger HMM. The DOIAD, QORL and RT4I1 families are not included in this study, because the amount of data available on these families is insufficient to satisfy the minimum inclusion size employed here.