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Table 4 Domain conservation ratios.

From: Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement

Family

Name

Catalytic

Coenzyme

Ratio

MDR005

PDH

28

8

3.50

MDR080

bPDH

97

32

3.03

MDR070

 

30

10

3.00

MDR013

FDH

39

13

3.00

MDR047

 

47

20

2.35

MDR075

 

65

28

2.32

MDR032

bADH2

60

27

2.22

MDR065

 

41

19

2.16

MDR076

 

43

20

2.15

MDR004

QORX

17

8

2.13

MDR002

PTGR

7

14

0.50

MDR035

 

12

27

0.44

MDR003

FAS

8

18

0.44

MDR008

VAT1

10

37

0.27

  1. This table shows the number of strictly conserved positions in the catalytic and coenzyme binding domains, respectively. Furthermore, the ratio between these numbers is calculated. The table only lists families with a ratio of 2 or more and of 0.5 or less.
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BMC Bioinformatics

ISSN: 1471-2105

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