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Table 1 average values for inter-array correlation coefficients

From: Algorithm-driven Artifacts in median polish summarization of Microarray data

Sample size

Original arrays

Permutated arrays

 

MAS5

RMA

GCRMA

MAS5

RMA

GCRMA

2

0.7704

0.8113

0.7825

3.31-4

0.0456

0.1795

3

0.7721

0.8547

0.8524

-9.88-5

0.7761

0.9144

4

0.7601

0.8220

0.8039

-4.63-4

0.1154

0.2647

5

0.7604

0.8460

0.8432

3.01-5

0.4316

0.7140

6

0.7557

0.8144

0.7949

-5.90-5

0.1086

0.2544

7

0.7584

0.8357

0.8212

-1.09-5

0.2481

0.5436

8

0.7555

0.8210

0.7981

1.00-4

0.0913

0.2274

9

0.7529

0.8334

0.8125

3.46-5

0.1587

0.4140

10

0.7536

0.8163

0.8048

1.20-4

0.0757

0.1929

11

0.7536

0.8242

0.8097

-1.01-4

0.1118

0.3170

12

0.7552

0.8156

0.8000

9.03-5

0.0637

0.1665

13

0.7523

0.8264

0.8061

1.85-5

0.0843

0.2546

14

0.7531

0.8154

0.8014

6.90-5

0.0547

0.1482

15

0.7537

0.8217

0.8087

2.82-5

0.0659

0.2048

16

0.7511

0.8146

0.8052

7.68-5

0.0467

0.1307

17

0.7511

0.8232

0.8062

-6.80-5

0.0540

0.1654

18

0.7532

0.8159

0.8022

-7.89-5

0.0411

0.1150

19

0.7546

0.8247

0.8059

9.65-6

0.0460

0.1418

20

0.7592

0.8228

0.8024

4.69-6

0.0364

0.1008

30

0.7602

0.8208

0.8022

3.09-5

0.0226

0.0620

50

0.7578

0.8233

0.8038

7.72-6

0.0124

0.0326

100

0.7543

0.8190

0.8023

-2.41-8

0.0058

0.0157

  1. average inter-array correlation coefficients at different sample sizes, using three different normalization procedures.