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Figure 5 | BMC Bioinformatics

Figure 5

From: Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model

Figure 5

Coherence within predicted chromatin domains. The values (and corresponding permutation test p-values) for predicted chromatin domains (red for two state model, K = 2, and blue for three, K = 3) are compared with the distribution estimated from 1000 random permutations (black). Shown is the average within domain variance in gene expression (left) and the average level of Gene Ontology accordance as measured by Fleiss' Kappa (right) under the null hypothesis of incoherent domains. Note that our models result in significantly different values.

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