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Table 4 Recommended unification protocols.

From: Biana: a software framework for compiling biological interactions and analyzing networks

External Databases

Attributes (identifiers)

Uniprot, GeneBank, IPI, KeggGene, COG, String

ProteinSequence AND taxID

Uniprot, HGNC, HPRD, DIP, MPACT, Reactome, IPI, BioGrid, MINT, IntAct, String

UniprotAccession

Uniprot, String

UniprotEntry

Uniprot, HGNC, HPRD, DIP, String

GeneID

Uniprot, SCOP(promiscuous)

PDB

  1. List of external databases and the attributes (identifiers) proposed to be used in a unification protocol.
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BMC Bioinformatics

ISSN: 1471-2105

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