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Table 1 Overlap between the top 1000 genes identified by different methods and the SAGE BetaBin ranking.

From: Empirical bayes analysis of sequencing-based transcriptional profiling without replicates

Bayes Error by SAGE BetaBin ASC DGEseq Z-test Fisher's exact test EdgeR
≈ 0 320 189 178 180 259
≤ 0.01 391 254 242 244 332
≤ 0.05 516 404 397 398 436
  1. The Bayes error is computed using SAGE BetaBin [16] using all replicates. The top 1000 genes by each methods in the model is identified by using only the first sample in Wild-type or mutant group in [3] (GSM272105 and GSM272106).