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Table 1 Overlap between the top 1000 genes identified by different methods and the SAGE BetaBin ranking.

From: Empirical bayes analysis of sequencing-based transcriptional profiling without replicates

Bayes Error by SAGE BetaBin

ASC

DGEseq

Z-test

Fisher's exact test

EdgeR

≈ 0

320

189

178

180

259

≤ 0.01

391

254

242

244

332

≤ 0.05

516

404

397

398

436

  1. The Bayes error is computed using SAGE BetaBin [16] using all replicates. The top 1000 genes by each methods in the model is identified by using only the first sample in Wild-type or mutant group in [3] (GSM272105 and GSM272106).