Skip to main content

Table 2 Summary of collected metagenomic fragments.

From: Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency

Data type I (contigs)

   

Assigned

Unassigned

 

Location

Position

Total contigs

CDSs a

Contigs b

Average length (bp)

whale fall sub. 1

Pacific Ocean, Santa Cruz Basin (N33.30 W 119.22)

section of rib bone

35975

33139

7039

1167

whale fall sub. 2

Pacific Ocean, Santa Cruz Basin (N33.30 W 119.22)

bone

32459

32395

7660

1199

whale fall sub. 3

West Antarctic Peninsula Shelf (S65.10 W64.47)

bone

27130

26841

4990

1357

   

Our duplication c

Data type II (singletons)

   

Assigned

Unassigned

 

Sex

Age

Total reads

CDSs d

Singletons

Average length (bp)

Japanese In-A

Male

45 years

76434

29247

13399

1057

Japanese In-B

Male

6 months

80617

14718

7078

1058

Japanese In-D

Male

35 years

84237

48033

28244

1034

Japanese In-E

Male

3 months

80852

27860

10838

1124

Japanese In-M

Female

4 months

89340

26350

8456

1008

Japanese In-R

Female

24 years

85787

45438

21661

998

Japanese F1-S

Male

30 years

78452

40427

15378

1005

Japanese F1-T

Female

28 years

81348

46487

21780

958

Japanese F1-U

Female

7 months

82525

27332

11791

969

Japanese F2-V

Male

37 years

80772

49411

19733

1006

Japanese F2-W

Female

36 years

79163

42750

16961

1039

Japanese F2-X

Male

3 years

80858

41337

19351

1040

Japanese F2-Y

Female

1.5 years

79754

49315

20061

990

  1. a Genes with best hits at 30% identity or higher in Archaea and Bacteria kingdoms from JGI
  2. b Genes with best hits less than 30% identity in Archaea and Bacteria kingdoms from JGI
  3. c Phred and PCAP assembly package for Japanese samples.
  4. d The number of predicted open-reading frames showing similarity to genes in the "in-house NR database".