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Table 2 Summary of collected metagenomic fragments.

From: Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency

Data type I (contigs)     Assigned Unassigned
  Location Position Total contigs CDSs a Contigs b Average length (bp)
whale fall sub. 1 Pacific Ocean, Santa Cruz Basin (N33.30 W 119.22) section of rib bone 35975 33139 7039 1167
whale fall sub. 2 Pacific Ocean, Santa Cruz Basin (N33.30 W 119.22) bone 32459 32395 7660 1199
whale fall sub. 3 West Antarctic Peninsula Shelf (S65.10 W64.47) bone 27130 26841 4990 1357
    Our duplication c
Data type II (singletons)     Assigned Unassigned
  Sex Age Total reads CDSs d Singletons Average length (bp)
Japanese In-A Male 45 years 76434 29247 13399 1057
Japanese In-B Male 6 months 80617 14718 7078 1058
Japanese In-D Male 35 years 84237 48033 28244 1034
Japanese In-E Male 3 months 80852 27860 10838 1124
Japanese In-M Female 4 months 89340 26350 8456 1008
Japanese In-R Female 24 years 85787 45438 21661 998
Japanese F1-S Male 30 years 78452 40427 15378 1005
Japanese F1-T Female 28 years 81348 46487 21780 958
Japanese F1-U Female 7 months 82525 27332 11791 969
Japanese F2-V Male 37 years 80772 49411 19733 1006
Japanese F2-W Female 36 years 79163 42750 16961 1039
Japanese F2-X Male 3 years 80858 41337 19351 1040
Japanese F2-Y Female 1.5 years 79754 49315 20061 990
  1. a Genes with best hits at 30% identity or higher in Archaea and Bacteria kingdoms from JGI
  2. b Genes with best hits less than 30% identity in Archaea and Bacteria kingdoms from JGI
  3. c Phred and PCAP assembly package for Japanese samples.
  4. d The number of predicted open-reading frames showing similarity to genes in the "in-house NR database".