Table 3 Summary of reassignments using discarded metagenomic data.
From: Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency
Data type I (contigs) | Â | Re-assigned | Â | Â | ||
|---|---|---|---|---|---|---|
| Â | Contigs | Contigs | Average length (bp) | Rate (%) | r (phylum) | r (family) |
whale fall sub. 1 | 7039 | 1050 | 1388 | 14.9 | 0.98 | 0.92 |
whale fall sub. 2 | 7660 | 995 | 1295 | 12.9 | 0.98 | 0.77 |
whale fall sub. 3 | 4990 | 720 | 1400 | 14.4 | 0.97 | 0.79 |
Data type II (singletons) | Â | Re-assigned | Â | Â | ||
| Â | Singletons | Singletons | Average length (bp) | Rate (%) | r (phylum) | r (family) |
Japanese In-A | 13399 | 3542 | 1074 | 26.4 | 0.95 | 0.85 |
Japanese In-B | 7078 | 2050 | 1073 | 28.9 | 0.99 | 0.90 |
Japanese In-D | 28244 | 5542 | 1061 | 16.9 | 0.89 | 0.72 |
Japanese In-E | 10838 | 2888 | 1129 | 26.6 | 0.99 | 0.95 |
Japanese In-M | 8546 | 2159 | 1057 | 25.2 | 0.93 | 0.86 |
Japanese In-R | 21661 | 3993 | 1020 | 18.4 | 0.96 | 0.80 |
Japanese F1-S | 15378 | 3216 | 1018 | 20.9 | 0.95 | 0.82 |
Japanese F1-T | 21780 | 4395 | 971 | 20.1 | 0.93 | 0.59 |
Japanese F1-U | 11791 | 3711 | 983 | 31.4 | 0.99 | 0.99 |
Japanese F2-V | 19733 | 4007 | 1020 | 20.3 | 0.90 | 0.61 |
Japanese F2-W | 16961 | 4011 | 1052 | 23.6 | 0.89 | 0.77 |
Japanese F2-X | 19351 | 4402 | 1054 | 22.7 | 0.92 | 0.66 |
Japanese F2-Y | 20061 | 4766 | 1002 | 23.7 | 0.96 | 0.82 |