Figure 8
From: Reticular alignment: A progressive corner-cutting method for multiple sequence alignment
Effect of pairwise indel scoring combined with reticular optimization. Alignment accuracy of RetAlign for different reticular threshold values with only pairwise indel scoring enabled and comparison to that of ClustalW. With no other advanced scoring techniques RetAlign slightly outperformed ClustalW for thresholds over 200. Alignment accuracy was measured as the mean all-column SP and TC score on BAliBASE v2.01 Reference sets [1–5].