Skip to main content

Table 1 Insertion-deletion score matrix used by RetAlign.

From: Reticular alignment: A progressive corner-cutting method for multiple sequence alignment

  - - - * * - * *
- - - OP/ 2 OP/ 2 EX
- * OP/ 2 - OP OP/ 2
* - OP/ 2 OP - OP/ 2
* * EX OP/ 2 OP/ 2 -
  1. Row: indel pattern formed by two consecutive columns of the 1st sequence, column: that of the 2ndsequence. OP and EX are the gap opening and extension penalty.