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Figure 6 | BMC Bioinformatics

Figure 6

From: Sampling the conformation of protein surface residues for flexible protein docking

Figure 6

Further reducing sample size of test patches with clustering. All-atom RMSD between the unbound conformation (green dot), the best pick in the final ensemble after clustering (red cross), and the bound state for all 700 patches in our data set. We observe that in most cases, we are able to retain in our small sample of conformations for a patch a best pick that is better than the unbound conformation in representing the bound state.

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