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Table 2 Peptide and protein identification time for the three workflows

From: Speeding up tandem mass spectrometry-based database searching by longest common prefix

Workflow

Experiment 1

Experiment 2

Workflow-1

3679

8278

Workflow-2

2236

4430

Workflow-3

2228

4111

  1. Workflow-1, with no special data structure; workflow-2, with peptide indexing;
  2. workflow-3, with ABLCP. The unit of time is minutes.