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Table 5 The time needed to construct ABLCP and peptide indexing

From: Speeding up tandem mass spectrometry-based database searching by longest common prefix

Database

Workflow

Full-specific

Semi-specific

Non-specific

Human

ABLCP

41

41

41

 

Peptide Index

50

603

6475

SwissProt

ABLCP

196

196

196

 

Peptide Index

242

2919

24828

  1. The experiments were performed on the IPI-Human V3.65 and Uniprot/SwissProt V56.2 protein sequence databases for full-, semi- and non-specific digestion. The unit of time is seconds.
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BMC Bioinformatics

ISSN: 1471-2105

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