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Table 6 The time needed to read peptides from the disk

From: Speeding up tandem mass spectrometry-based database searching by longest common prefix

Database

Workflow

Full-specific

Semi-specific

Non-specific

Human

ABLCP

3

108

144

 

Peptide Index

20

317

3588

SwissProt

ABLCP

16

441

1032

 

Peptide Index

144

2301

25283

  1. The time needed to read peptides from the disk for peptide indexing or online digestion for ABLCP. The experiments were performed on the IPI-Human V3.65 and Uniprot/SwissProt V56.2 protein sequence databases for full-, semi- and non-specific digestion. The unit of time is seconds.
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BMC Bioinformatics

ISSN: 1471-2105

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