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Table 6 Accuracy measures: Illumina's default method versus rmx estimator

From: Preprocessing of gene expression data by optimally robust estimators

Estimator

rmx

Illumina

Mean

median

5% trim

5% winsorize

25% SD

0.114

0.116

0.125

0.121

0.117

0.122

median SD

0.133

0.135

0.140

0.142

0.133

0.137

75% SD

0.150

0.153

0.157

0.160

0.150

0.153

99% SD

0.308

0.309

0.314

0.310

0.310

0.313

null log-fc IQR

0.186

0.187

0.208

0.208

0.188

0.192

null log-fc 99%

0.362

0.366

0.412

0.408

0.377

0.388

null log-fc 99.9%

0.495

0.504

0.584

0.555

0.525

0.546

  1. Accuracy measures of [11] and [12] (smaller is better) for the rmx estimator for s ∈ [0, 0.05], Illumina's default method as well as mean and SD (mean), median and MAD (median), 5% trimmed mean and SD (5% trim) and 5% winsorized mean and SD (5% winsorize).
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BMC Bioinformatics

ISSN: 1471-2105

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