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Figure 2 | BMC Bioinformatics

Figure 2

From: Prediction of RNA secondary structure by maximizing pseudo-expected accuracy

Figure 2

Performance of RNA secondary structure prediction by maximizing the pseudo-expected MCC with the stochastic sampling (Method M1). Performance of RNA secondary structure prediction by "X-Max-pMCC (N)" means the estimator of Eq. (23) with model X and number of samples N with respect to MCC. In the figure, we have also plotted the SEN-PPV curves of the γ-centroid estimator [10] with the CONTRAfold model ("CONTRAfold-gCentroid"; the black line) and with the McCaskill model ("McCaskill-gCentroid"; the gray line). The points and curve in gray and those in black indicate the McCaskill [16] and CONTRAfold [7] models, respectively. See Additional file 1, Figure S3 in the supplementary paper for the results of F-score.

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