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Table 5 Contribution of true positive EC numbers by BrEPS and PRIAM

From: BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation

Species

BrEPS A

PRIAM

Both

BrEPS B

PRIAM

Both

C. glutamicum

5,3

24,6

70,2

8,5

13,6

78,0

E. coli

5,0

9,7

85,3

8,6

1,2

90,1

P. aeruginosa

9,5

23,6

66,8

12,3

14,5

73,1

S. solfataricus

7,4

20,4

72,2

12,3

15,8

71,9

T. thermophilus

6,3

25,0

68,8

9,6

14,5

75,9

 

% EC numbers contributed in „Loose" SOT

Species

BrEPS A

PRIAM

Both

BrEPS B

PRIAM

Both

C. glutamicum

5,5

25,8

68,8

12,9

17,3

69,8

E. coli

14,5

10,5

75,1

25,9

1,7

72,3

P. aeruginosa

10,4

26,1

63,5

15,8

16,6

67,6

S. solfataricus

9,9

22,5

67,6

22,0

15,9

62,2

T. thermophilus

9,5

27,8

62,7

13,6

17,4

68,9

  1. Table 5 shows the percentage of unique and common EC numbers that BrEPS and PRIAM contributed to the joint set of all true positive hits. BrEPS contributed between 5% and 15% unique hits, while PRIAM contributed in general between 10% and 25% unique hits; except for the E. coli rows in the rightmost column of Table 2, where PRIAM reached less than 2%.