From: Haplotype association analyses in resources of mixed structure using Monte Carlo testing
 |  |  | Missing data rates (%) | |||||||
---|---|---|---|---|---|---|---|---|---|---|
 |  |  | 0 | 5 | 10 | 15 | ||||
Data | nloci | Phasing type | accuracy | time(s) | accuracy | time (s) | accuracy | time (s) | accuracy | time (s) |
CC | 5 | new* | 0.87 | 1.49 | 0.85 | 1.50 | 0.82 | 1.94 | 0.80 | 2.95 |
 |  | HAPLORE‡ | 0.87 | 1.75 | 0.85 | 2.09 | 0.82 | 1.74 | 0.80 | 2.4 |
 |  | GCHap†| 0.87 | 1.16 | 0.85 | 1.28 | 0.82 | 1.66 | 0.80 | 1.44 |
 | 10 | new | 0.62 | 5.94 | 0.57 | 10.13 | 0.53 | 15.54 | 0.49 | 30.21 |
 |  | HAPLORE | 0.61 | 20.44 | 0.56 | 32.0 | 0.52 | 42.73 | 0.49 | 56.51 |
 |  | GCHap | 0.57 | 2.56 | 0.53 | 4.44 | 0.49 | 5.19 | 0.46 | 7.53 |
 | 15 | new | 0.36 | 42.74 | 0.33 | 122.48 | 0.28 | 316.55 | 0.26 | 1260.62 |
 |  | HAPLORE | 0.36 | 90.38 | 0.32 | 147.25 | 0.27 | 167.37 | 0.21 | 302.84 |
 |  | GCHap | 0.30 | 4.84 | 0.27 | 8.17 | 0.23 | 11.36 | 0.22 | 17.86 |
TRIO | 5 | new | 0.98 | 1.53 | 0.95 | 1.72 | 0.92 | 2.19 | 0.90 | 2.49 |
 |  | HAPLORE | 0.98 | 1.47 | 0.95 | 1.50 | 0.92 | 1.17 | 0.90 | 1.47 |
 |  | GCHap | 0.88 | 1.15 | 0.85 | 1.38 | 0.82 | 1.54 | 0.80 | 1.60 |
 | 10 | new | 0.95 | 2.81 | 0.89 | 4.45 | 0.84 | 6.93 | 0.77 | 13.54 |
 |  | HAPLORE | 0.95 | 4.48 | 0.89 | 7.39 | 0.84 | 10.99 | 0.77 | 35.09 |
 |  | GCHap | 0.59 | 3.36 | 0.55 | 6.53 | 0.51 | 7.44 | 0.47 | 10.69 |
 | 15 | new | 0.92 | 4.52 | 0.81 | 8.15 | 0.73 | 15.13 | 0.65 | 107.28 |
 |  | HAPLORE | 0.90 | 12.50 | 0.80 | 56.25 | - | - | - | - |
 |  | GCHap | 0.36 | 7.63 | 0.31 | 11.45 | 0.27 | 16.55 | 0.24 | 29.08 |
ASP | 5 | new | 0.99 | 1.05 | 0.98 | 1.61 | 0.96 | 1.59 | 0.95 | 2.00 |
 |  | HAPLORE | 0.99 | 0.61 | 0.98 | 0.74 | 0.96 | 0.60 | 0.95 | 0.67 |
 |  | GCHap | 0.89 | 0.98 | 0.86 | 1.35 | 0.84 | 1.40 | 0.81 | 1.43 |
 | 10 | new | 0.97 | 2.22 | 0.95 | 2.47 | 0.92 | 3.30 | 0.89 | 3.53 |
 |  | HAPLORE | 0.97 | 2.06 | 0.95 | 2.53 | 0.92 | 3.82 | 0.89 | 4.34 |
 |  | GCHap | 0.60 | 2.49 | 0.56 | 3.74 | 0.53 | 5.17 | 0.48 | 6.34 |
 | 15 | new | 0.93 | 2.99 | 0.91 | 3.64 | 0.85 | 4.5 | 0.80 | 7.90 |
 |  | HAPLORE | 0.91 | 3.61 | 0.89 | 32.64 | - | - | - | - |
 |  | GCHap | 0.37 | 5.31 | 0.31 | 7.55 | 0.28 | 9.66 | 0.24 | 15.59 |
LP1 | 5 | new | 0.99 | 2.04 | 0.98 | 1.88 | 0.98 | 1.96 | 0.97 | 2.02 |
 |  | HAPLORE | - | - | - | - | - | - | - | - |
 |  | GCHap | 0.87 | 1.60 | 0.86 | 1.64 | 0.85 | 1.69 | 0.85 | 1.82 |
 | 10 | new | 0.98 | 3.45 | 0.97 | 3.80 | 0.96 | 3.94 | 0.95 | 5.27 |
 |  | HAPLORE | - | - | - | - | - | - | - | - |
 |  | GCHap | 0.63 | 4.90 | 0.61 | 6.46 | 0.59 | 7.00 | 0.59 | 6.54 |
 | 15 | new | 0.96 | 6.76 | 0.95 | 8.23 | 0.93 | 10.85 | 0.92 | 54.92 |
 |  | HAPLORE | - | - | - | - | - | - | - | - |
 |  | GCHap | 0.45 | 8.17 | 0.42 | 9.29 | 0.40 | 10.72 | 0.39 | 15.35 |