A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins

BMC Bioinformatics

Table 1 Identified RNA stems

Conservation score	Sites	Gene overlapping sites	Areas	Gene overlapping areas	Stems
≥ 90	6,713	4,874	673	481	438
80-90	76,503	59,450	4,385	3,395	3,397
70-80	243,781	191,259	19,654	15,619	40,600
60-70	1,299,386	70,587	1,050,411	56,467	93,004
50-60	3,348,784	2,690,862	97,464	78,472	83,222
< 50	53,217,663	42,298,490	N/A	N/A	1,086,937
Total	58,192,830	45,315,522			1,307,598

Number of sites, gene overlapping sites (annotated gene that include any of the sites), areas (An area with conservation score c is a set of contiguous sites, with at least one site scoring c or higher, surrounded by 50 consecutive sites all having a score below c), gene overlapping areas (annotated gene overlapping any area, as defined), and number of predicted stems within the corresponding conservation score intervals are shown.

ISSN: 1471-2105