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Table 2 GO categories associated with high PE.

From: The complexity of gene expression dynamics revealed by permutation entropy

Conditions

Biological Process

FDR

p-value

Molecular Function

FDR

p-value

Control

response to abiotic or biotic stimulus

2.8e-19

transcription factor activity

3.4e-04

 

response to stress

1.6e-13

other enzyme activity

2.1e-03

 

other biological processes

7.7e-10

other molecular functions

4.5e-02

Cold

response to stress

4.9e-08

transcription factor activity

1.7e-07

 

other biological processes

1.3e-07

receptor binding or activity

3.8e-03

 

response to abiotic or biotic stimulus

8.1e-06

kinase activity

2.9e-02

 

transcription

3.3e-04

  
 

signal transduction

3.2e-03

  

Genotoxic

response to abiotic or biotic stimulus

2.9e-20

kinase activity

7.6e-06

 

response to stress

3.8e-16

transcription factor activity

8.9e-04

 

other biological processes

1.8e-11

transferase activity

1.7e-03

 

signal transduction

7.3e-03

transporter activity

1.4e-02

Osmotic

response to stress

1.4e-16

transferase activity

7.0e-04

 

response to abiotic or biotic stimulus

1.4e-14

kinase activity

1.4e-03

 

other biological processes

1.3e-08

transcription factor activity

1.3e-02

 

signal transduction

1.3e-02

other molecular functions

4.3e-02

Salt

response to abiotic or biotic stimulus

3.0e-12

structural molecule activity

1.1e-13

 

response to stress

6.0e-07

transferase activity

2.3e-03

 

other biological processes

3.3e-03

other enzyme activity

2.4e-02

UV-B

response to abiotic or biotic stimulus

3.1e-12

transferase activity

1.3e-02

 

response to stress

2.3e-11

kinase activity

1.4e-02

 

other biological processes

1.6e-08

  

Wounding

response to abiotic or biotic stimulus

1.4e-17

other enzyme activity

6.3e-06

 

response to stress

1.0e-15

transferase activity

2.1e-03

 

other biological processes

1.1e-10

transcription factor activity

2.1e-03

 

other metabolic processes

4.7e-02

hydrolase activity

1.2e-02

   

transporter activity

4.1e-02

Drought

response to abiotic or biotic stimulus

2.8e-19

structural molecule activity

7.9e-18

 

response to stress

6.0e-19

transferase activity

6.7e-05

 

other biological processes

6.4e-10

other enzyme activity

3.8e-04

 

other metabolic processes

1.8e-02

  

Heat

other biological processes

7.0e-12

transferase activity

9.3e-04

 

response to abiotic or biotic stimulus

7.7e-10

other enzyme activity

2.1e-03

 

response to stress

3.4e-08

hydrolase activity

3.1e-02

 

electron transport or energy pathways

9.5e-03

  

Oxidative

response to abiotic or biotic stimulus

7.3e-17

transcription factor activity

2.2e-03

 

other biological processes

6.5e-14

other enzyme activity

5.7e-03

 

response to stress

7.7e-10

kinase activity

1.4e-02

   

transferase activity

1.6e-02

  1. GO-Slim process and function annotation terms enriched in genes with maximal PE under control and treatment conditions. FDR (False Discovery Rate) p-values obtained from Fisher Exact tests (see Methods) correspond to the Benjamini-Hochberg-corrected raw p-values [47]. Only FDR values smaller than 0.05 are listed.