From: RISCI - Repeat Induced Sequence Changes Identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridization pipeline to identify repeat induced sequence changes in closely related genomes
Parameters
Fast
Medium
Slow
Blast -v
2
3
5
Maximum no of Blast HSPs compared
100 (in each orientation)
500 (in each orientation)
10000 (in each orientation)
Pros and cons
fastest, least accurate
Fast, reasonably accurate
Most accurate