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Table 6 Baseline algorithm: merging equivalent SNPs and pruning redundant rules, no skipping rules.

From: FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium

 

time

#tag SNPs

mem

#rules

chr19

4.34

9444

30.29 MB

951,392

chr21

9.91

6929

74.99 MB

1,747,900

chr22

16.5

7327

50.20 MB

1,658,769

  1. The co-occurrence model is used. max_size = 3, min_r 2 = 0.95.
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BMC Bioinformatics

ISSN: 1471-2105

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