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Table 7 Baseline algorithm WITHOUT merging equivalent SNPs.

From: FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium

 

time

#tag SNPs

mem

#rules

chr19

31.4

9476

209.83 MB

17,798,798

chr21

72.3

6959

555.42 MB

35,278,021

chr22

90.5

7342

340.59 MB

30,954,495

  1. The co-occurrence model is used. max_size = 3, min_r 2 = 0.95.
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BMC Bioinformatics

ISSN: 1471-2105

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