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Table 8 Baseline algorithm WITHOUT pruning redundant rules.

From: FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium

 

time

#tag SNPs

mem

#rules

chr19

4.24

9439

75.70 MB

3,048,090

chr21

9.60

6942

191.86 MB

5,643,004

chr22

15.8

7327

130.19 MB

5,563,473

  1. The co-occurrence model is used. max_size = 3, min_r 2 = 0.95.
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BMC Bioinformatics

ISSN: 1471-2105

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