Table 1 Quantification of the structural word extraction from the non-redundant data set.
From: Mining protein loops using a structural alphabet and statistical exceptionality
Words |
|
|
|
|
|---|---|---|---|---|
Number of words | 3310 | 166 | 2214 | 930 |
(%) | (11.7%) | (5.0%) | (66.9%) | (28.1%) |
Number of fragments | 249953 | 11435 | 129781 | 108737 |
(%) | (60.2%) | (4.6%) | (51.9%) | (43.5%) |
Nb fragments/word | 75.5 | 68.9 | 58.6 | 116.9* |
All-loop coverage rate | 72.7% | 5.1% | 46.5% | 40.2% |
Short-loop coverage rate | 70.3% | 4.4% | 38.9% | 39.3% |
Long-loop coverage rate | 74.9% | 5.7% | 53.9% | 41.1% |
Loops containing at least one word | 84.8% | 9.8% | 60.3% | 58.2% |
Short loops containing at least one word | 79.7% | 6.1% | 48.1% | 49.4% |
Long loops containing at least one word | 97.8% | 19.1% | 90.9% | 80.4% |
